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I'm looking at annotations in the proteins and humangenes domain in the `google_patent_research.annotations` table. It appears that the annotations themselves are normalized to their preferred name, b…
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### Contact Details
pamela.baker@alleninstitute.org
### Schema Name
Image-based Spatial Transcriptomics Metadata
### Oranizational Usage
BICAN
### General Description
This is a metadata schema …
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I think it would be useful for mygene to also store information about proteins with no associated Entrez record. For example:
http://www.uniprot.org/uniprot/A2NXD2
http://www.uniprot.org/uniprot/Q5N…
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@nunogit will look at how to provide guidelines wrt ID providers and SOPs for next datasets and which form that should be in: part of the CMMI, included in cookbook...?
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Hi,
could someone explain me why the feature type for a line in a GFF is not taken from the third GFF filed but `bcftools csq` expect each gene and transcript with a prefix (e.g., `gene:` or `trans…
fbemm updated
3 years ago
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### Context
#488
### Problem or idea
We should store/keep track of the genes that were included in the compendium used to generate the reference distribution. As I note in the "future thought…
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From https://wiki.openphacts.org/index.php/SureChEMBL
> Compounds are assigned SureChEMBL identifiers as used in the SureChEMBL interface and download files. Please note these identifiers have no rel…
stain updated
8 years ago
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**Collection/dataset this task is for:**
- file name - 19 filtered h5 + 19 raw h5
- link to existing collection in cellxgene
- DCP wrangling [ticket](https://github.com/ebi-ait/hca-ebi-wrangler-cent…
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Hi team, great interest in the wonderful software!
When I run this in 10x folder
```
(compass) vip06@bio3:~/scdata/filter/day5$ compass --data-mtx matrix.mtx.gz features.tsv.gz barcodes.tsv.gz --n…
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Hi
I am trying to get tss map for a set of genes
here is my code
ngs.plot.r -G hg19 -R tss -C bamfile -O bamfile.tss -T H3K4me3 -L 3000 -E /genelist -F protein_coding
genelist format
ENSG00…