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YosefLab
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Compass
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
BSD 3-Clause "New" or "Revised" License
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multiprocessing.pool.MaybeEncodingError: Error sending result: '<multiprocessing.pool.ExceptionWithTraceback object at 0x7f840db71ee0>'. Reason: 'TypeError("cannot pickle 'SwigPyObject' object")'
#113
xwt778
opened
2 days ago
0
tested versions of dependencies for building compass docker image
#112
rajuadduri
opened
2 weeks ago
0
need for Docker image
#111
pengbo233
opened
1 month ago
1
normalization
#110
shimasadri
opened
2 months ago
1
'TypeError("cannot pickle 'SwigPyObject' object")'
#109
Ronvaknins
closed
5 months ago
1
Seeking Guidance on Data Format (my own reaction and genes files from KEGG) Conversion for COMPASS Analysis
#108
ptdang1001
opened
6 months ago
0
Are there any schematics to visualize where each reaction are at relative to each subsystem?
#107
ahdee
opened
7 months ago
1
Metabolite secretion/uptake ?
#106
kmunozforti
opened
7 months ago
0
Analysis pipeline using RECON2.2 and metabolites
#105
kmunozforti
opened
7 months ago
0
Reactions output file identical values
#104
kmunozforti
closed
7 months ago
0
Pseudo-bulk or mixed-effects modeling approach to differential testing of reaction scores
#103
mariecrane
closed
8 months ago
1
CPLEX academic version "Page Not Found"
#102
mebbert
closed
10 months ago
3
AttributeError: 'DataFrame' object has no attribute 'iteritems'
#101
zhongguozhiwang
opened
10 months ago
7
Can the software use GPU to calculate the reactions.txt. Because CPU is too slow.
#100
YzGLab
opened
11 months ago
0
Application to UMI based technology
#99
Harry25R
opened
1 year ago
0
Consider using GLPK instead of CPLEX
#98
emyr666
opened
1 year ago
1
installing cplex package
#97
bakhtiararya
opened
1 year ago
0
Use Compass to solve a large amount of time-series bulk RNAseq data
#96
xiaowaileeli
opened
1 year ago
0
Run frozen at 0%
#95
brycemash
opened
1 year ago
1
How to correctly get data from seurat object
#94
brycemash
closed
1 year ago
0
Fixed
#93
brycemash
closed
1 year ago
0
AttributeError: 'DataFrame' object has no attribute 'iteritems'
#92
JoelHaas
closed
1 year ago
7
Reason: 'TypeError("cannot pickle 'SwigPyObject' object")'
#91
hello257
closed
2 months ago
4
Compass analysis from Seurat subcluster - get_reaction_consistencies issue
#90
france-hub
opened
1 year ago
9
Sample_name problem
#89
ZachLW
opened
1 year ago
2
Simulating pharmacologic inhibition through FBA?
#88
agirgis3
opened
1 year ago
0
where can I get more information about labeled_reactions?
#87
qiuju-Zhang
opened
1 year ago
1
multiprocessing.pool error or CPLEX error (DEMO file)
#86
jiangzh-coder
opened
1 year ago
1
Can the interrupted Compass code continue to run?
#85
qiuju-Zhang
closed
1 month ago
2
Numeric entry is not a double precision number (NaN)
#84
littleju777
opened
1 year ago
1
No module named 'compass_analysis'
#83
muralyv
closed
1 month ago
2
how to run model recon3 in recon3-misc branch?
#82
Roger-GOAT
opened
2 years ago
0
How to do differential reaction activity analysis between samples in two conditions?
#81
wang-tan
opened
2 years ago
0
CPLEX - data size issue
#80
sid5427
closed
2 years ago
1
How to interpret reactions in GSMM without genes associated in annotation?
#79
kpruss
opened
2 years ago
0
expression.tsv has reactions in place of gene symbol. Gene symbol is also misspelled.
#78
j2r2jones
opened
2 years ago
0
How to interpreter the Compass results?
#77
Zessi-C
opened
2 years ago
1
Is Recon3D version 3.01 suitable for model construction?
#76
MingwuDuan
opened
2 years ago
1
TypeError: alpha must be a float or None when Figure 2E replication
#75
Roger-GOAT
opened
2 years ago
2
seperate runs
#74
gneedle1
opened
2 years ago
0
wilcox_results show error: KeyError: "Passing list-likes to .loc or [] with any missing labels is no longer supported.
#73
Roger-GOAT
closed
2 years ago
0
Completely identical reaction penalties for samples - is that possible?
#72
loganminhdang
closed
2 years ago
0
how to deal with batch effect
#71
Fengzs1997
opened
2 years ago
1
Tutorial is not match your code now,,,,,,
#70
bxxfl
closed
2 years ago
0
Using Compass with Bulk RNA-seq
#69
gepmat
closed
2 years ago
1
Post-processing of secretion / uptake values
#68
linus235
opened
2 years ago
0
running Compass from a Singularity image
#67
hmassalha
closed
1 year ago
3
Cplex api fix
#66
schel337
closed
2 years ago
0
Problem while building up model cache
#65
michallipinski
closed
2 years ago
0
TypeError("cannot pickle 'SwigPyObject' object")
#64
garricklu
closed
2 years ago
1
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