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JB2 port of Andrew Duncan's (@agduncan94) JB1 plugin that browses and imports GDC data.
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##### Issue Type
- Bug Report
##### Summary
Migrating GoCD from 20.4 to 20.7 business continuity does not work as expected
##### Environment
Full logs is to big to be submitted here, plea…
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In the public portal database, there are a few different values for `NCBI_BUILD`. But we should only have one version (GRCh37/hg19) in our database. Let's:
- [x] change hg19 to GRCh37 (either in th…
jjgao updated
4 years ago
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I would like to use the ScanNeo pipeline and would like to reproduce the results described in the [paper](https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btz193/5384…
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I just started to use R maftools. It is a great package, however there seems to be a bug when reading gzipped maf.
For example, using this public file from TCGA https://portal.gdc.cancer.gov/files/9…
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On the exploration tab of the GDC portal, I can identify 71 TCGA samples which are solid tissue normal samples from ovarian tissue:
![image](https://user-images.githubusercontent.com/976675/7396650…
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Dear Developer,
**first of all, thank you for your work and support.**
I'm struggling on making cnvkit running. As pointed out by the title of the issue, I'm working with RNA expression data.
…
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#### What are the scientific goals of the analysis?
Related to #3 Tumor Mutation Burden Analysis.
In order to make the pediatric brain tumor SNV comparison to TCGA adult data more interpretable…
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Hi, I was working on some WES(WXS) data and mzml data. Basicly i follewed the Variant Peptide Identification procedure in this paper 《Integrated Proteogenomic Characterization of Clear
Cell Renal Ce…
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https://support.bioconductor.org/p/122806/#125810
> Hi, thank you very much for this library.
>
> I seem to have noticed a mismatch on some UUID when converting from file_id. For example, '56467ebd…