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ylab-hi
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ScanNeo
A pipeline for identifying indel derived neoantigens using RNA-Seq data
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Errors about parsing the VEP annotation output file (tmp_vcf)
#21
paulhtyang
opened
2 years ago
2
Example data set
#20
sandain
opened
2 years ago
0
Fix anno phase
#19
sandain
closed
2 years ago
0
anno phase not working
#18
sandain
closed
2 years ago
7
vep_install --> perl INSTALL.pl
#17
serge2016
closed
2 years ago
2
Downstream.pm should be installed vep's INSTALL.pl
#16
serge2016
opened
2 years ago
0
Update Wildtype.pm from pVACtools
#15
serge2016
opened
2 years ago
0
PyVCF is deprecated for python3
#14
serge2016
closed
2 years ago
0
VEP cache/plugin directory option not implemented
#13
sandain
closed
2 years ago
2
Fix support for mouse
#12
sandain
closed
2 years ago
0
KeyError 'mm39_ref'
#11
sandain
closed
2 years ago
2
PyVCF
#10
sandain
opened
2 years ago
3
Got a warning: Warning: There was a mismatch between the actual wildtype amino acid and the expected amino acid
#9
ptnaimelmm
opened
3 years ago
0
transIndel_call.py ,StopIteration
#8
Mt-cn
closed
3 years ago
1
No .bwa.bam generated
#7
Mt-cn
closed
3 years ago
2
IOError: [Errno 9] Bad file descriptor when calling IEDB analysis
#6
paulhtyang
closed
3 years ago
6
empty vcf file in step2 anno
#5
eunjeongcho
closed
3 years ago
2
indel.bam not being created
#4
aditisk
closed
2 years ago
3
pysam module not found
#3
aditisk
closed
4 years ago
3
Where can I access the LNCaP RNA-seq data
#2
indapa
closed
4 years ago
1
why does ScanNeo realign with bwa?
#1
indapa
closed
3 years ago
1