-
Hello,
I installed arcs meet the error which can not find gcc. I installed the gcc 6 with conda. The version should be good when I checked the log file.
I tried lots of times to install different ve…
-
Hi,
I have installed funannotate with the docker option, as I could not make the Hombrew installation correctly.
All databases were installed correctly with "funannotate setup" except for dbCAN bec…
-
Dear developers,
I have updated **sprot** db, after I was wondering why Prokka annotated IS110 family transposases as hypothetical protein, even **Uniprot blast** knows the protein sequence.
Wha…
-
Hi,
I have installed the latest version of Prokka and I get the following error:
[19:53:29] Could not run command: tbl2asn -V b -a r10k -l paired-ends -M n -N 1 -y 'Annotated using prokka 1.14.6 …
avonm updated
4 years ago
-
Hello I installed all packages, except rmblastn and fasta. I tried lots of times, I still get the version as following.
In fact I have installed rmblastn and fasta in conda.
Could you help me check …
-
Debian has a package for HMMER 2. There is a bio.tools entry hmmer3 only.
https://salsa.debian.org/med-team/hmmer2/blob/master/debian/control
https://salsa.debian.org/med-team/hmmer2/blob/master/deb…
-
Hi,
I used prokka using the flag --rnammer but in the log file I saw that barrnap has been used instead.
I used the prokka 1.12
Can you explain or fix that?
Thanks
, or its flake8 plugin equivalent (installed with ``pip install flake8-docstring``), we can count missing docstrings:
```
$…
-
**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
**Describe the bug**
Funannotate setup fails on dow…
-
Hi, when I use `hmmsearch` with its `-A` parameter on for MSAs, it raise an error as:
```pre
//
Fatal exception (source file p7_alidisplay.c, line 771):
backconverted subseq didn't end at expect…