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Dear monocle3-Team,
thanks for the very useful package, I see monocle3 as an huge improvement to monocle2.
When calling _learn_graph()_ on my data, I get the warning message:
> In louvain_clu…
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@songeric1107
The colors should be consistent for the cell types between P2 and P7 for the following datasets:
- P2, mouse, scRNA-seq, cochlea (Hertzano/Ament) and P7, Mouse, cochlea, scRNAseq (H…
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Hi,
Thank you for producing and maintaining this package, it gives me good insight of lineage trending.
I set an initial cluster, but the endpoints of the lineage somehow fall outside the final clu…
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First, thank you so much for this package.
I have been following along with the example pages and have been able to successfully plot a network diagram and identify communities with louvain detecti…
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I am experiencing this exact same issue. In my graph I have specified a color under E(g)$color that I want to use, and it is not working. It is taking the default colors used in ggplot2.
I have tri…
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sc.pl.tracksplot, produce a wrong highlight bar without brackets.
```python
pbmc = sc.datasets.pbmc68k_reduced()
marker_genes = ['S100A8', 'GNLY', 'NKG7', 'KLRB1', 'FCGR3A', 'FCER1A', 'CST3']…
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`➜ python3.10 -m pip install codequestion`
```
sformers, torch, txtai, codequestion
Successfully installed MarkupSafe-2.1.2 codequestion-2.0.0 faiss-cpu-1.7.3 html2markdown-0.1.7 huggingface-hub-…
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**Is your feature request related to a problem? Please describe.**
I have a graph of social media data. I used community detection algorithms (e.g. Louvain) to detect different sets of communities, b…
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Hi @qianjiaqiang
I have some queries regarding Cluster defination:
You periviously mentioned that clusters are basically generated by `louvain algorithm` BUT in sense of genetics what exactly …
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Hi Simon,
I was trying to install `scepia` with pip but I'm facing the following error
`pip install git+https://github.com/vanheeringen-lab/scepia.git`
Error
```
Failed building wheel f…