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Dear Alex,
I used STAR to map RNA-seq to bacteria genome. When I build index,I only use fasta file without gtf file. The parameter "--genomeSAindexNbases" is 10. Then I start mapping step, it returns…
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Load in store app.
Sync to datacollector app.
OrganismNameOriginal
Abiotrophia defectiva
Achromobacter (alcaligenes) xylosoxidans
Achromobacter anxifer
Achromobacter denitrificans
Achromobact…
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Here are some issues I noticed when doing searches in the microbe genomes:
- If I paste the search term 'Yersinia pseudotuberculosis EP2/+' into the search area, the search seems to go into a never en…
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I'm have a feeling that this is a silly formatting issue but I keep getting the error from snippy-core `ERROR: BED [Chrom ChromStart ChromEnd locus tag Comment] has CHR that is not in the reference`
…
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Took me a while to hunt these down - some applications were getting "wide character" errors because they expect ASCII characters only.
This one is a non-standard prime / tick / apostrophe character…
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Der er blevet rapporteret en fejl i følgende spørgsmål:
* ID: 5bfc208082ad7772c64cdd2f
* Semester: 7
* Sæt: 2018/F…
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Hi, how do I use different version of panel? (ex. walker-2015 has 2017 version and 2019 version, by default 2019 version is used but I want to use the 2017 version). Also, can you explain what is the …
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Dear Iqbal lab,
I have sequences from an MTB isolate which is a known 50:50 mixture between two different strains, one of which is RIF resistant due to the H455Y mutation in the rpoB gene. In the J…
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Hello,
Thanks for making bulk genome download from NCBI so much easier! I am looking to download multiple genomes of the species _Mycobacterium tuberculosis_ (taxid: 1773) from refseq/genbank so that…
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Hello,
Trying to illustrate why I think we should not systematically make the host/symbiont triad:
PARENT CLASS: GO:0044112 growth in other organism involved in symbiotic interaction
…