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I imported 43 MSGF+ result files into PeptideShaker, which took several hours with 50 GB allotted memory. Now I'm trying to export the combined results as a mzidentML file to make a Skyline library, b…
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Provide a `userParam` type for temporary metrics that don't have a CV term (yet).
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When I'm using `Spectra::joinSpectraData` to reproduce the example from MSnbase vignette, I find the result is not the same as the original one.
Example from MSnbase vignette:
```R
## find path…
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```
(Collect change requests for the CV here.)
[Term]
id: PI:00216
name: sequest:PeptideRank
def: "The SEQUEST result 'Rank' in out file (peptide)." [ref:ref]
is_a: PI:00153 ! search engine specific …
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I'm trying to convert a large (1.1 GB) mzid file from an MS-GF+ search to idXML with IDFileConverter. The process has been running for almost one hour now and is using upwards of 16 GB of memory. I've…
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All,
I ran into another problem. After converting the files using the ThermoRawFile Parser to mzxml, successfully running the searches using X!Tandem, I discovered this "Controllertype-0" error af…
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Bonus points for determining those tools automatically
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Hi,
I am trying to design my own template to export ID features and one of the parameters I am particularly interested in is INtensity of the Precursor Ion. I can see that this value is present in th…
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Dear SearchGUI developers,
after I updated SearchGUI to version 4.0.29 and PeptideShaker to ver 2.0.21, I got the error message "Overflow detected." right after starting the search (direct in Import…
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Hi,
I am seeing an issue on processing of some raw files using a pipeline with X!Tandem, MS-GF, and Comet. This is with versions 4.0.4 of SearchGUI and 2.0.5 of PeptideShaker. I am running using th…