-
Hi there!
@dwarton @JenniNiku @BertvanderVeen
I know people have asked this question in the past but I'm not sure if I ever saw a definitive answer. Does the fact that microbial 16S sequencing da…
-
"Blob is taking too long to generate." This might be because I've added too much inline code?
-
Add plugin that takes in a collection variable and a beta diversity method parameter, then returns 1) a data table with one column per PCoA dimension returned and 2) metadata about the computation.
…
-
Hello,
I had previously used ampvis2 to generate various ordination plots successfully, however, since the previous update the same code no longer works (I had gone back to increase the font size i…
-
Hi, To assign the same colors to each country in different plots, even when some countries are not present in all plots,
could you please give me idea of how to assign same colors for different …
-
The following comments were in the compute RAML in the EDA data service; much of that RAML has been copied/transferred to the compute service. I feel like an issue is a better place to discuss and ad…
-
Hi sbslee,
I was using dokdo for plotting PCoA as below:
```
import dokdo
import matplotlib.pyplot as plt
%matplotlib inline
import seaborn as sns
sns.set()
qza_file = '/home/rupesh/rupesh…
-
App-specific viz selector icons:
- [ ] Ranked abundance box: boxes decreasing in height
- [ ] Ranked abundance scatter: two trends?
- [ ] Beta div scatter: look clustered
- [ ]
-
Hi @sbslee
I have plotted a pcoa biplot using this;
```
pcoa_results = dokdo.ordinate(qza_file, biplot=True, number_of_dimensions=10)
ax = dokdo.beta_2d_plot(
pcoa_results,
metadata…
-
Hi everyone,
I am quite new to Qiime2 and songbird, and perhaps this thread has already been answered elsewhere. I apologize if so.
I want to analyze differential composition of fungal communiti…