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Hi, how do I run the code looking for proteases based on peptide sequences, for just one protein? the script wants the peptide and protein vector to have the same lengths...
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Hi,
I have a sample that was digested with 5 proteases. I am wondering if I can run these as a group and only produce one protein.tsv file that covers different digests? I want to improve coverage …
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### Project short name:
KidneySexBasedTranscriptome
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/1sQ…
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'modulation by symbiont of host signal transduction pathway' -> perturbation of host...
'modulation by symbiont of defense-related host salicylic acid-mediated signal transduction pathway' -> pertur…
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I would like to swap a ubiquitin protease annotation over from
GO:0035871 | protein K11-linked deubiquitination
to
GO:NEW | K11-linked deubiquitinase activity
We already have
GO:0061578…
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Hi,
I am trying to use a SBOL glyph to show 2A sequences. Unfortunately, there isn't a glyph for it. The best alternative I can find at the moment is the protein cleavage site. 2A sequences, howev…
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This could be an interesting feature to add. An histograms of the length of the detected peptides.
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New term request Pancreatic secretory trypsin inhibitor high in blood (segal_051020155928): PSTI UMLS: 3276179
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- 'symbiont defense to host-produced reactive oxygen species'
- 'effector-mediated defense to host-produced reactive oxygen species'
- 'symbiont defense to host-produced nitric oxide' >> symbiont-…
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### Description of the issue:
* Non-metabolic genes are discovered in the GPR rules of following reactions in `Protein assembly` and `Protein degradation` subsystems:
| gene | Reasons …