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https://docs.google.com/presentation/d/1XoKQILUMS4j7UO4ZejY_Tjhb0SlkO1sl5RjJG-Q64Sc/edit#slide=id.p4
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## Is your feature request related to a problem? Please describe
Am working on in-planta infection RNAseq assays for the Lentil-Ascochyta pathosystem. The pathogen side of things works perfectl…
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## Motivation
To better understand how similar samples are, PCA is a good start.
However, there the current analysis is insufficient:
- first 3 PCs often do not separate all identified clusters,
…
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## New feature
An emerging standard for Nextflow pipelines is a root `tower.yml` file, used for [providing reports to Tower](https://help.tower.nf/23.1/reports/overview/#providing-reports).
A po…
ewels updated
9 months ago
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It would be nice to make it easier for people to know what should be referenced if they use a pipeline in a manuscript. For example, `nf-core references ` could return a list of the references that yo…
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Hi all again,
cc: @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC
After giving some time to think, I realized we could ask slightly different for a solution the n…
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I think it would be great if the samplesheet could handle additional columns (which would be ignored by the RNA-seq pipeline, but would be used by some downstream analysis). Keeping these in a separat…
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### Description of feature
I often work with non-human germline data and in sarek it is required to specify a patient ID and a sample ID in the samplesheet. The IDs that are then written to the cra…
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This is not exactly a bug, but a comment and a question regarding how Salmon uses the positioning data in fastq files. We had a series a RNASeq samples where the majority of the reads were listed at 0…
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Hi,
I am trying to work with RNAseq data in the funannotate pipeline. After running `funannotate update` there are multiple CDS features with the same coordinates in my output file. When running anti…