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https://mp.weixin.qq.com/s/jAkmtUW1BS44CWXEAHLzmA
ixxmu updated
3 months ago
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When I run `Crop()`, even an exact copy of code I have previously run without issue, instead of a Large FOV object, I get the following error message:
```r
> wt1_cropped_coords1 cropped.coords
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Hi @lcolladotor , I'm having some difficulties with installation of Bioc package dependencies in the `Install dependencies pass 1 / 2` steps in the `biocthis::use_bioc_github_action()` workflows.
I…
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Hi there,
I just want to plot a scatterpie with the axis from the mirror img.
```
plotSpatialScatterpie(
x = spe,
y = mat,
cell_types = colnames(mat),
img = TRU…
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I am following the Visium tutorial and the plots that are being generated with my Visium data are being flipped around (mirror-image) for each plot. When I read them into the Spatial Experiment object…
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Hello, I had a question about how CallPeaks handles merging of MACS2 peak calls grouped by metadata.
In your paper under DNA accessibility data processing writes: "Peak calling was performed for ea…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/waldronlab/TENxIO
Confirm the following by editin…
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Hello,
I'm tring to apply your neighbouRhood analysis in spatial transcriptomics data. However i'm not familiar with CellProfiler results format. Could you give me a hint about the column meaning in …
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This snippet was working perfectly fine for me until today:
```
biomaRt::select(
biomaRt::useMart(biomart = "ensembl", dataset = "mmusculus_gene_ensembl"),
keys = c("ENSMUSG00000051951", "…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/YuLab-SMU/ggsc
Confirm the following by editing e…