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**Submitting author:** @SarahMaman (MAMAN Sarah)
**Repository:** https://forgemia.inra.fr/bios4biol/intronseeker
**Branch with paper.md** (empty if default branch): master
**Version:** v1.0
**Editor:*…
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* spladder version:[v3.0.4](https://github.com/ratschlab/spladder/releases/tag/v3.0.4)
* Python version:v3.8
* Operating System:Ubuntu
### Description
I observe in several samples that all exo…
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I ran test1.sh in the example and got core dumped.
```
>cat test1.log
# Fri Jul 29 10:58:50 2022: Log information is stored in file /ddn/work/cjh/test/braker-2.1.6/tests/test1/braker.log
sh: lin…
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[This page on the support website](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/advanced/references#premrna) describes how to prepare a pre-mRNA reference pack…
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Hi,
I used the example data to try reproducing the demo pipeline. With the adata_result generated, I used it for computing velocity stream and the error happened after running mv.velocity_graph(). …
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I downloaded and am using the latest xpore 2.0 release off github.
1. Basecalled all 3 replicates of each of the WT and KO Yeast SK1 from the epinano paper.
2. Used the data preparation in the do…
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Hi,
I am trying to run bambu with the following code:
se.quantOnly
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Hi,
I have been using bambu lately for novel isoform identification from long-read RNA-seq data these days. And it is efficient and useful.
However, an issue happened when performing novel isoform…
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**1. What were you trying to do?**
I made a pangenome using cactus pangenome like this:
---
rm -rf js; source /da/cbt/GX/oakeled1/genomes/cyno/pangenome/cactus-bin-v2.6.0/cactus_env/bin/activat…
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Hi there,
I'm having an issue with bambu which I never had with version 2.2.0 and I was wondering if you could help me with it.
I have 4 different bam files (congtaining 4.4M, 4.75M, 356k, 26k ali…