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I know this isn't quite your wheelhouse, but for some reason, one of my samples doesn't finish the phantompeakqualtools step, but no useful error is given. Can you provide some guidance as to how I ca…
bc2zb updated
5 years ago
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I'm running minimap2 version 2.15-r905 on polished and unpolished contigs produced by wtdbg2. For sequences that are mostly or entirely lower case, minimap2 is writing paf alignment records with only …
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### Summary
At end of issue #2693 @effigies noted that the error that @dalejn was experiencing was due to the SLURM master throwing an error when it was polled with squeue, possibly because it was …
agt24 updated
6 years ago
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Please describe:
1. What you were trying to do
Build vg (master branch)
2. What you wanted to happen
Type `make`; get an executable some minutes later
3. What actually happened
boost-subset fa…
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Hi dynverse devs, wow! I am impressed with this project and the effort to make it easy to run many trajectory methods from the same prepared task. I have been testing dyno out with a scRNA dataset wit…
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The following command reliably produces a kernel panic on the [NIH HPC Biowulf cluster](https://hpc.nih.gov/). (3 tests on 2 different nodes on 2 separate days with 2 different versions of singularit…
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I'm trying to install HLA-PRG-LA on the NIH Biowulf cluster. I'd like to complete the steps in the 'Test run' section. Can you please include the actual command(s) needed to run HLA-PRG-LA on the NA…
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**Description of bug:**
There seems to be an error when plotting the results of Fastq Screen. If `fastqscreen_simpleplot: false`, which it seems to be by default if the number of samples is low, the …
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Let me start off by saying I'm using Nextflow 0.28.2, it's what is available on my HPC environment. If that's the issue, then so be it. I'm attempting to use the chipseq pipeline on a slurm cluster wi…
bc2zb updated
6 years ago