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Hi Rodrigo,
I still have a problem with the script. Could you take a look? Thanks in advance.
 as follows:
```bash
>> Gathering species codes for species with full genomes
>> Glycoside-Hydrolases
>> 145 …
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Hi Rodrigo,
I tried to extract a few families and I noticed that out of e.g. 3000 entries in CAZy, I only get 250 when I run cazy-parser.
Is that the expected behavior?
Thanks,
George
geo80 updated
6 years ago
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For my current project I'm working on a comparison of various strains within the same species. I used the `--strain` option to annotate each of the genomes to be compared.
When running `funannotate…
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sudo docker run --name test3 -v /home/ruplal/Documents:/home/ruplal/Documents -it haidyi/run_dbcan:latest python run_dbcan.py ./Documents/assembly.fa meta --out_dir ./Documents
ERROR: You missed so…
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Hi Thomas
Sorry for not replying the last time, I was getting busy with another project which kept me from working on the cazy problem I had.
I cloned now all new scripts and got an account at NCB…
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Hi,
I successfully installed SACCHARIS and additional software. I tried to follow the example from your publication to test the pipeline and got an error message after the cazy_extract.pl script. …