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Dear Logan Team,
On your web interface, there is a tab for Contigs/Unitigs Search, how could I obtain these results for all the IDs?
I believe there is no such info in the result.zip file, as when…
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This isn't really an issue as much as an output question: I just updated to the newest version of rosella (hadn't done so in a bit) and was excited to see a bunch of new outputs I didn't have previou…
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Hi Dr.zhang
Thanks your great work in ALLHIC !
I am following the step in  That's using PureSeq.jl but I have a problem in julia 0.6.2:
ERROR: LoadError: AssertionError: n_ref == contigs.cou…
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I encountered an error, "error, no valid sequences were found," while using BRAKER for gene prediction, causing the process to stop. Based on responses to similar issues, there seem to be two main cau…
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Hello,
I'm really appreciative of the newick format that you recently introduced!
I think this is a bug in building the tree. As I'm working with the newick file, it appears the newick tree is m…
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Hello Xiaofei,
I have used HapHic at MAPQ1 NM < 3 as explained in the front matter page, the initial contigs were from the p_utg.fa and the --gfa file used was the corresponding gfa file.
![imag…
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## Problem description
Currently (version 0.2.0-beta2), `flye_end_repair.sh` is run after the assembly step to fix any potential issues with the region around the ends of circular contigs. At the end…