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Hi,
I followed your example starting from per-existing Seurat Object. Function "Improved_Seurat_Pre_Process" executed without any problems. However there is something wrong with the next step (which …
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Hi,
Running the following command promt an error.
` sweep.res.list Error: $ operator not defined for this S4 class
I have installed the package through the following command:
`install_gi…
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Hello,
Thank you for creating this useful package (and also the genotyping package, cellsnp-lite) that has been critical to my work in bone marrow transplant research.
I have ran the vireo packa…
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```
#run code
import omicverse as ov
import scanpy as sc
import matplotlib.pyplot as plt
ov.utils.ov_plot_set()
adata = ov.read('VIA-test-P.h5ad')
adata
```
```
AnnData object with n_obs × n…
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Dear Developers,
Thanks for introducing such a tool to detect multiplets in single-cell epigenomic data.
I’m completely new to using this tool and have some simple questions. I have successfully…
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Dear all,
SPT uses the pyrimidine strand column of the mutation after SPMG call for replication strand asymmetry analyses.
However, the pyrimidine strand is 0 for some doublets and indels which co…
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A bug report ([#891381](https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=891381)) was filed against the [undertime Debian package](https://tracker.debian.org/undertime), which uses this library, beca…
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Hi!
I hope to run Souporcell on 709 cells generated from plate-based RNA-seq, in lieu of the 10x Genomics in which Souporcell is initially meant for. This dataset consist of high coverage cells of …
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Hello thank you for this amazing resource!
I just wanted to ask how processed the expression matrix from the file is? I want to recluster the midbrain data but didn't know which steps to include e.g.…
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Hi,
Thank you very much for developing these great packages. Could you elaborate why the following warning?
`Warning message:
In run.CSIDE.general(myRCTD, X1, X2, barcodes, cell_types, cell_typ…