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Hello,
I am experimenting with different tools for transcriptome assembly on a data set of RNA-seq reads from tomato I obtained from SRA. I used StringTie to assemble the transcriptome and then ran…
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Thanks for developing this use of PICRUSt! Your idea of dynamically retraining based on dada2 reads is a great fit for any program that does not use 'close-ref' OTUs. I think this method could be wild…
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Hi,
Very cool and easy to use tool for hi-c scaffolding!
Based on the idea of centromere-to-centromere clustering, when i was doing manually curation for my genome, seems like i lost one of centrom…
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**Versions**
```
conda env with python 3.8
poppunk v2.7.0
pp-sketchlib 2.1.3 (also tried 2.0.0)
```
**Command used and output returned**
```
poppunk_assign --db ../Haemophilus_influenzae_v2_…
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Hi! Thanks for all of your work building SICER. It's our peak caller of choice, especially for broad domains!
I occasionally run into an error in the step: "Determining the score threshold from rando…
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Thanks for a great tool and for being on top of open issues - this helped with a lot of trouble shooting.
I now get to an issue I cannot resolve.
I'm running Souporcell with known genotypes:
`/usr/…
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Dear Community,
I've been attempting to run Trinity unsuccessfully. My first attempt involved using the reads in *fq.gz format, however the file decompression using own Trinity scripts did not wor…
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Hi Malte,
I'm getting an error (see below) when using quickEnhancers function.
The quickTSSs function worked without an issue.
Best
Bogumil
> enhancers
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Hi there, thank you for the great and detailed package!
I was wondering if you could help me resolve an error with the pipeline where the process is killed before STAR alignment is finished. I am r…
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Dear developer,
I have installed vdsearch. However, I faced this issue while running $ "vdsearch --help".
Error:
```
Traceback (most recent call last):
File "/home/chong/miniconda3/bin/v…