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Dear shujun，
First of all apologize for my bad English. I have sequenced dozens species, these species belong to the same genus (eg. wild, cultivars, landrances), and I will construct a pan-genome. S…
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so we have a basically a prototype of what the visualisation could be like,
now we need to build the api that goes with it
so we need to document what data the UI needs, and how they would like it…
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Hey! I do have another question!
After annotating my MAGs, I saw that FeGenie didn't find any transport-related clusters in any of my MAGs, which wouldn't make sense biologically (I have, among o…
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Hi,
I have written a tool called pharokka (https://github.com/gbouras13/pharokka) that annotates bacteriophage genomes. Pharokka uses mmseqs2 to match predicted CDS to the PHROGs (https://phrogs.lm…
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Hi,
Thank you for the wonderful tool. I wonder if it is possible to modify VAE's loss function the following way.
Say in a binning job, as auxiliary information from alignment, we know that so…
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...
2021-03-13 16:16:44 : Written final scores for species 117 to graph file
2021-03-13 16:16:45 : Written final scores for species 110 to graph file
2021-03-13 16:16:45 : Written final scores fo…
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script prepare and be able to launch processing with standard parameters.
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- [x] a pbs script to launch coolAdmin pipeline (stable version) that taking parameters (`lib_id`) and this script i…
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Dear developer,
I have installed vdsearch. However, I faced this issue while running $ "vdsearch --help".
Error:
```
Traceback (most recent call last):
File "/home/chong/miniconda3/bin/v…
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I am running STRaglr 1.5.0 (the current release) and get the following error on multiple CRAMs:
```
python straglr.py NA19676.hg38.cram ../1KG_ONT_VIENNA_hg38.fa NA19676.hg38_straglr_patho --loci …