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Hello everyone,
I want to create a differential heattree to compare microbial communities between the different locations of my reactor.
Usually, I use
taxa::filter_taxa(grepl(taxon_names, p…
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As I explain to other researchers the merits of DADA2, I am always at a loss as to what to call the final sequences from the DADA2 results. I usually just say "OTU", because it is easy to understand, …
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**Submitting author:** @akrinos (Arianna Krinos)
**Repository:** https://github.com/AlexanderLabWHOI/EUKulele
**Version:** v1.0.2b
**Editor:** @will-rowe
**Reviewer:** @johanneswerner, @jcmcnch
**Arch…
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Hello,
I am having problems to properly run paprica in one of my datasets. Do you have any clue about? I get the following error:
```
generating data for edge Bacteroidetes_939
generating data f…
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- [x] PNNL training
- [x] Scientific background reading
- [x] Go over expectations, meeting and update schedule
- [x] Create repository ~(or branch?)~ for her work
- [x] Assessment of where she is…
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Instead of modeling data like this:
```
{
id: "sample123",
"annotations":
[
"has_characteristic": {
"name": "depth"
},
"has_raw_value": "10m…
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I believe this to be a sequencing artifact rather than an issue with DADA2, but perhaps you have advice on how best to mitigate this issue computationally. I did an experiment where I basically challe…
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**Submitting author:** @jdbaugher (Joseph D Baugher)
**Repository:** https://github.com/CFSAN-Biostatistics/SeroTools
**Version:** v0.2.0
**Editor:** @majensen
**Reviewers:** @amoeba, @Maghnuso
**Man…
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Hello!
I would like to do a metagenomics analysis with the "_MetaPhlAn2 to profile the composition of microbial communities_" tool from Galaxy and using as input file, one that is the output of "_FAS…
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Dear all,
I used sra tools to download sequence data by the command below
.. /sratoolkit/bin/fastq-dump --split-files SRR2153427
to download and split the data from SRR2153427, while only the…