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Hi~
I have run STAR-fusion in two different mode (directly use fastq files and Kickstart mode). When I compare results from these different modes, I find the result is quite different.So,which mode…
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Hi,
I have finished SCM detection using Misplice. Could you tell us how to get variant peptide (8-mer, 9-mer, 10-mer) according the result.
Thanks ~
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pvactools version: 1.3.0
Python version: 3.5.5
Operating System: Linux
**Describe the bug**
`.filtered` file is empty even though there are plausible candidates in `.all_epitopes` file
**To R…
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```
use Bio::DB::Fasta;
test new("dir/to/Homo_sapiens.GRCh38.dna_sm.primary_assembly.fa")
```
and I get the following output
```
------------- EXCEPTION: Bio::Root::Exception -------------
MS…
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* pvactools version: docker image: griffithlab/pvactools (1.3.5)
* Python version:
* Operating System: Host: Ubuntu 18.04
**Describe the bug**
After running prediction of class I and class II th…
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INFO: Annovar reference files of build hg19 were given, using this build for all analysis.
INFO: Begin.
INFO: Proper directory already exists. Continue.
INFO: Proper directory already exists. Conti…
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1) Update citation section of pVACtools. Add: https://doi.org/10.1038/s41588-018-0283-9
2) Include hyperlink of citation to the "Table of Contents" panel on the main page
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@TotalMiss commented on [Fri Jul 06 2018](https://github.com/griffithlab/pVAC-Seq/issues/344)
I try to use pVAC-Seq to identify neoantigens. I noticed there is a germline variation next to somatice…
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* pvactools version:1.1.0
* Python version:2.7
* Operating System:linux
**Describe the bug**
Traceback (most recent call last):
File "/opt/conda/bin/pvacseq", line 11, in
sys.exit(main(…