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### Description of the bug
I've just upgraded sarek from 3.14 to the latest version. When I run it now it crashes out almost immediately with:
`ERROR ~ Cannot invoke method startsWith() on null ob…
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As a **community user** I want **to be able to understand how the Gentropy ariflow pipeline works ** because **I want to reproduce it with nextlfow.**
## Background
Background to this task is a res…
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The nf-core pipeline template uses a [custom timestamp](https://github.com/nf-core/tools/blob/7785b4cd8d3ce1321832e1a7ae4f2874509e31f4/nf_core/pipeline-template/nextflow.config#L243-L259) in the vario…
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I tried using the nf-co2footprint plugin.
However, my workflow is always exiting with the following error:
`TraceRecord field 'memory' is not set!`
Contrary to what the error message says, the …
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### Description of the bug
Issue with latest Nextflow release.
This was a silent message before, it's now an error and fails the pipeline.
### Command used and terminal output
_No response_
### Re…
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_Originally posted by @adamrtalbot in https://github.com/nextflow-io/nextflow/issues/3314#issuecomment-1836300135_
Now Managed Identities are supported by Nextflow (#4897), we should be able to mod…
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## Bug report
Hello,
I submitted a `Nextflow` workflow to our cluster (`SLURM` scheduler), but `Nextflow` did not terminate after all tasks were completed. It eventually timed out because of the …
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- [x] Implement the `NomadService` to generate the expected JSON
- [x] Explore the use of `template` to send the `command.*` files to Nomad client
- [ ] Implement the file transfer logic in `.comman…
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Hello,
The analysis completes successfully, no errors, but the snp-dists folder contains only the .txt output
I've attached the snp matrix, heres my execution command, and some version info
`…
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### Description of the bug
When I run nf-core/mag with the
```
--host_fasta_bowtie2index "/path/to/references/"
```
The bowtie log file gives me the following warning
```
Warning: Output file './…