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currently the `downloadDistiLD` function separately downloads the two annotation files for GWAS SNPs and HapMap LD blocks with assigned SNPs and gene annotations. The function uses the log file as th…
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I have this error when running via docker:
```
docker run -t -i -v `pwd`:/home/docker jbarlow83/ocrmypdf "my\ test\ file.pdf" test.pdf
ERROR - Traceback (most recent call last):
File "/appen…
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I created a list of packages that are in my legacy python 3.5.0 install and in anaconda3 and in easybuild python 3.5.2. This is a totlal 323 packages. I compared that to what is currently in eb-3.5.2 …
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Hi!
I have passed the run_pipeline_test.sh test.
Then I tried to run pipeline on AWS (m4.16xlarge) to analyze two different data, one is 1 G and the other is ~4 G. But the pipeline all failed at the…
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It would be helpful if nextflow could create a log file of every command run similar to snakemake or ruffus.
For example, snakemake can print out a "dry run" of a workflow
```
> snakemake -np
rule b…
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OCRmyPDF fails when stdout is not connected. Is this necessary?
Background: I am calling ocrmypdf from a program which attachs a logfile handle to stderr, and nothing to stdout. I can work around…
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is there any specific roadmap about which function will be enhanced or added ？
can we make the ocr part Plug-and-Play，what if we can combine google cloud ocr api ? right now it seems we can use hoc…
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Hi,
I've tried to run the example in metAMOS version 1.5rc3: sh test_phylosift.sh
And then it shows the following error. Could you help me answer this question?
```
Warning: BLASR is not fo…
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Version of ocrmypdf: 4.4.2
The following PDF cannot be OCRed:
https://app.box.com/s/4v1cmadxuqc5zjk0akezxvurrr8bxjo6
Without forcing the OCR, all pages are skipped: An output file is generated,…
AEgit updated
7 years ago
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ocrmypdf out.pdf o1.pdf
--- Logging error ---
Traceback (most recent call last):
File "/usr/lib/python3.4/logging/**init**.py", line 978, in emit
msg = self.format(record)
File "/usr/lib/pytho…