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First, thanks for the amazing package!
After a brief exchange with Andrea (at the Netbio talks), I experimented a bit more with seeds and reproducibility in coseq. Even when passing a seed argument…
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Hello,
Thank you for the great collections of scripts.
I've followed the online guide and am at the point where I would like to download hg19. I've cd to the SeqMule folder but I receive the er…
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Hi there,
So I am trying to build a mapping table between rat and human. My origin code is:
```{r}
human
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I am trying to get an environment that depends on `r-magrittr` to work but cannot get it to work from conda. Loading with `library(magrittr)` throughs an error: `Error: package or namespace load faile…
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A number of tools, like SURVIVOR, create binary matrix. Tools like ComplexHeatmap's UpSet plot can either accept input from A) lists of sets (like `upsetjs_r`) or B) binary matrix.
It would be nice…
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Hi,
I am trying to apply the "Cell type classification using an integrated reference" from the Seurat Vignette
[https://satijalab.org/seurat/v3.2/integration.html](url)
I integrated 4 query Seu…
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Using library(VennDiagram), the venn.diagram function formats category names and values in strange way when one of the variable is integer(0). For example, try following test code.
a
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**Select columns does not apply filter on output**
Select Columns widget when 1 column is selected connected to a Venn Diagram widget should give **the number of unique values** of said column, how…
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Hi,
I am encountering memory problems when I try to convert my Negative ADT from sparse matrix to matrix:
> neg_adt_matrix = GetAssayData(NegativeObject, assay = "ADT", slot = 'counts') %>% as.mat…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/MPIIComputationalEpigenetics/MAGAR
Confirm the fo…