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Since we can already search on SGD locus and HGNC IDs, how easy would it be to be able to add them in the list upload (clearly would need to toggle to say which species because of name overlaps).
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We'd like to move the disease annotation out of the contig files. One way to speed that up would be to write a tab delimited disease file as we are loading into Chado. We'd need:
- gene ID
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I don't think these can be easily transferred.
I have seen quite a few papers where one of the paralogs is involved in assembly, and the other one in translation, they areswitched over at some …
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My version is 2.0.16 and installed it via conda. When I ran PrepExternalSchema, I found the usage "chewBBACA.py [-h] -i [I] [--cpu [CPU]] [-v] PrepExternalSchema [PrepExternalSchema ...]" didn't work.…
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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
I am using funannotate 1.7.3 as it is the version th…
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Hi Torsten,
Not sure if this is also related to roary also but Id love to hear your opinion. I apologize for this long post in advance.
I want to use roary to compare my core and accessory gene …
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This might be a Panther issue. This is correct for pombe ebs1 but not for paralog est1
GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IBA with Q86US8 , ebs1…
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please add never in yeast
GO:0046627 | negative regulation of insulin receptor signaling pathway
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Hi,
How do I extract the list of orthologs and paralogs from orthogroups ?
Are the multiple sequences of same species in a given orthogroup called as paralogs ?
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Hello again,
I have encountered a situation where a single copy gene is split into different groups (e.g. group1 for taxa ABD, group2 for taxa CEF, and group3 for taxa G) but the nucleotide identit…