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While working on some workflows using the `3D Object Counter` I discovered a bug where 8-bit binary images created from ImageJ Ops (_i.e._ the output from a threshold op) and converted to `ImagePlus` …
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Right now, the current ImageJ settings (e.g., whether Edit>Options>ImageJ2 "Use SCIFIO when opening files" is ticked) impact the behavior of macros and scripts. This can cause very difficult-to-diagno…
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The FIJI launcher for windows doesn't work with java 11. This is related to wrong file separator
```
PS ~\Fiji.app> .\ImageJ-win64.exe --java-home="C:\\JAVA\\java-11-openjdk" --debug
PS ~\Fiji.ap…
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Here is a minimal example:
```python
import imagej
ij = imagej.init("2.5.0", add_legacy=False)
#-----
import napari, skimage
napari.view_image(skimage.data.cells3d())
```
The `view_image` ca…
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I ran into the following failures when building the melting pot with a J11 JDK:
```
[FAILURE] io.scif/scifio
[FAILURE] io.scif/scifio-hdf5
[FAILURE] io.scif/scifio-jai-imageio
[FAILURE] net.ima…
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Right now, Fiji and ImageJ2 have the problem that if unpacked into the `Program Files` directory on Windows, the ImageJ Updater does not have full, unimpeded read/write access to its own directory. Th…
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We can get rid of search.imagej.net in favor of a unified, as-you-type search that covers all the resources. We could also look at integrating the gitter indexer that was running before at CSBD. Integ…
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Hi,
The README states that Linux uses should "double click" on a file called "run" in the ImageJ folder. I would be glad to do that, but there is no such file in the ImageJ folder.
Zach
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Hi @Phlair,
We will potentially be writing a Java plugin to access the python code. Thought this might be of interest to you :)
Let's discuss further in person?
rg314 updated
3 years ago
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I try to access the Series Name of the images.
I can view the Series name via ImageJ
T…