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Hello,
Thank you for developing this pipeline.
I run the pipeline on a linux HPC system with the following input using -profile conda:
```
nextflow run WarrenLab/hic-scaffolding-nf \
-p…
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Hi, this is Dejun from the Noble lab. When I run
```
hic2cool convert test.hic test.cool
```
on one my .hic file, I got this error:
```
##########################
### hic2cool / convert ###
#…
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**What we need to accomplish:**
_Note: We need to quickly determine if integrating Discourse is the best option. If not, we need to build our own project submission & management functionality._
…
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@wozz any interest in incorporating the ability to run JuicePass Proxy (JPP) as a HA Addon directly into JPP? I've not built an HA AddOn before but looking at your wrapper, it seems like we could add …
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In the special case of single chromosome assemblies, there is no difference in "All" and the chromosome. So for this case make 2 changes
(1) add the whole-genome resolution to the list of expl…
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Hi.
We have an AIR app (JuiceboxBuilder) which relies on the standalone AIR runtime. If you need to, you can download the app from here: https://www.juicebox.net/download/
(The app installer is di…
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Hi,
I'm trying pore-C data analysis and have a couple questions probably trivial to you but I could not figure them out by looking at Readme documentations here.
I installed Pore-C-SnakeMake and f…
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The Hi-C heatmap created from `out_JBAT.hic` and `out_JBAT.assembly` is very complex. It's too difficult to manually curate in Juicebox. Should I work on a Haplotype at a time?
```shell
hifiasm -o S…
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Hello @chhylp123
This is an assembly of plant material that was initially thought to be diploid, as shown in Figure 1. It was later found to be tetraploid, as shown in Figure 2.
Figure 1
![5c7b…
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Could you please help me refine my workflow for assembling a phased triploid genome using hifiasm and HapHiC?
Here is the current plan:
1. Run the hifiasm pipeline with Hi-C data for triploid as…