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Hello,
I have simulated some human chromium data using LRSIM, and while I can run longranger basic fine, Supernova is failing.
Here's the error in the main log:
```
2017-09-13 23:26:37 [runti…
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Hi,
I think line 49 in NAIBR.py should not be:
```
data = parallel_execute(run_NAIBR,['chr21'])
```
I have an alignment with chromosome names: 1,2,3,4,...,X, Y, so I change a little bit of the …
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Hi,
When I set:
"cluster_settings": {
"cluster_type": "multiprocessing",
"processes": 16,
"cluster_options": {
"scheduler": "torque",
"queue"…
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Hi,
this is not an issue per say but I didn't find any tools that are able to generate the fastq file in the format required for Athena. Do you have any insights for that purpose ?
I was thinkin…
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Hello,
I am trying to run arcs with bam file (generated by 10x longranger align).But getting the following error. below is the command which I used for running arcs
command :
arcs -f genome.f…
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Hi.
delly coredump at torali::getLibraryParams
delly version: 0.7.6(with last source from git)
```
#delly call -t DEL -x /usr/hpc-bio/delly/human.hg38.excl.tsv -o t1.bcf -g /usr/bio-ref/10X-…
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Hi,
Chromium sequencing also has the problem of PCR duplicates and does UMI-tools support chromium sequencing? Can I attach barcode to read name and then run "dedup"?
Best,
Danshu
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```
Identify vertically bin-mapped params Vs along beams params.
RDI vertically bin-mapped params :
-UCUR
-VCUR
-WCUR
-ECUR
-CSPD
-CDIR
RDI along beams params (not tilt corrected) :
-ABSIn
-CMAGn
w…