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In this lesson we talk about keeping raw data raw and backing up that data. We often then get questions about what options there might be for storing data. We don't currently have any guidelines, but …
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Hi All,
This is not urgent, but wanted to log it as it is something that we should probably address in coordination with CRWG.
I am pretty sure that we discussed this, but I can't seem to find t…
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### Context
Since we have started this project, Array Express has stopped replicating data from NCBI GEO. Therefore unless we survey/download directly from there we won't get ALL THE DATA. Addition…
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### Summary
- What does this package do? (explain in 50 words or less):
*R implementation of the [PhyLoTa](http://phylota.net/) pipeline. It identifies orthologous sequences in GenBank using B…
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Hello,
I'm trying to use Trinity to assembly some short read data downloaded from the NCBI short read archive for a few species. Most have finished but one is giving me some trouble... First, it h…
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Use case, again not neuroimaging but interesting, brought up by Don Armstrong
http://www.ncbi.nlm.nih.gov/sra
sra-toolkit providing tools for conversion and visualization is in Debian
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As per the "EBI v3 metadata feedback" Google doc:
```
The current accession field names seem to imply a larger set of name spaces than
actually exist. All the INSDC databases share a name space …
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HI!
I download my sra file through prefetch and the sra file is about 60GB. But when i using fastq-dump to transfer it to fastq, at the beginning,it was very fast,but then it becomes slower and slowe…
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I'm having trouble running the HISAT2 galaxy tool. I have a collection of pairs of fastq files (forward and reverse) from an RNAseq experiment and would like to align them, but I'm getting:
```
Mus…
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Terminates with error when installing spades.
See for output
https://gist.github.com/anonymous/91922c21dc68f1beffa6f34f15c620c0
Thanks.