-
### Description
Referring the source rtl from [here](https://github.com/The-OpenROAD-Project/OpenROAD-flow-scripts/blob/master/flow/designs/src/coyote_tc/coyote_tc.v).
IO pad tcl script from [here…
-
Dear developers,
I have run sqm_longreads on 24 ONT samples and the .out.allreads.mcount file is not correct, Every sample's "reads" related columns are either empty or filled with 0 values, even t…
-
Another low-pri question for you @shntnu (-- and please let me know if I should be directing these elsewhere/to somebody else):
We see a bunch of rows that have no gene information attached to them…
-
perl bin/3UTR_orf.pl -i test_data/test.fa -d bin/swissprot/swissprot -a 8 -o project
error log:
BLAST Database error: No alias or index file found for nucleotide database [tmp_transcripts_with_o…
-
I'm getting segmentation faults thrown with one transcriptome, tried running both blastx and blastp and both fail. See here for the files:
https://drive.google.com/file/d/1v2f7wH-6G4MvFERaaZ96aDeFJjT…
-
Reenable test:
https://github.com/The-OpenROAD-Project/bazel-orfs/blob/6ccc97799f03019cdacae002ad1f2be06c785334/.github/workflows/ci.yml#L139-L141
-
## Expected Behavior
nuc reads would align to aa DB
## Current Behavior
`Input tmp1/15265602719800494645/search_tmp/18256837363344165166/search/pref does not exist`
## Steps to Reproduce (for …
-
Example abricate output:
```
2012-17035.fna gnl|Prokka|2012-17035_4 51134 51309 aadA1 1-184/972 ===...../...... 8 18.11 94.565
2012-17035.fna gnl|Prokka|2012-17035_2 27659 27769 aadA1 679-789/789 .…
-
Notes from Chloe's emails:
* Email on Aug 19, 2022:
- For our positive controls, ideally we’d like to establish a reference ORF paired with two mutants, one showing strong shifts and one sub…
-
I always get the "Segmentation fault (core dumped)" error while trying global alignment with a reference sequence and target sequences. I tried this alignment with different numbers of target sequence…