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A prior dependency package for the tool exists in the MTS. But conda is also available.
Once created, consider reopening this ticket for review (add tool to http://usegalaxy.org): See: https://git…
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Hi,
Thanks for developing this great tool. I just have 2 questions regarding CITE-seq-Count.
Question1:
So, I have a multimodal scRNAseq dataset in which both CITEseq and Hashtag antibodies wer…
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Hey people,
I will also try to put down what I remember of Amrits conversation with us.
- Look at differential network analysis. This can be used to see the differences in networks between the…
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Hello,
I am trying to reproduce your analyses on the 18 'ground truth' datasets provided with your paper on Zenodo (https://doi.org/10.5281/zenodo.5048449) and I realized that the two bulk datasets …
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Thank you for your reply before.
Now I can successfully use snakemake, and I have prepared all input files and softwares required for snakemake. I have made the config.yaml and put it in the folder "…
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Thank you for creating such a useful tool! I am interested in analyzing RNA-seq data, sequenced with Nanopore's PromethION, using IRFinder-S. The raw fastq formatted data from Nanopore are stored as a…
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Dear scRepertoire Team,
Thank you for developing this useful and easy-to-use package to analyze TCR seq.
I started learning RNA-seq analysis a few months back now I am getting my hands on TCR seq of…
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We support a Contribution Annotation Framework that allows us to indicate roles of conributors. However, many tutorials still use the "old" style contribution metadata (without roles)
Updating this…
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Hello,
We ran hera on our samples and we get "segmentation fault" for the quantification of one of our samples. Below is the command I ran and the error message that I get.
hera quant -i /expo…
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Hi,
This is not a technical issue but a conceptual question.
Till date, I have been using HOMER for ChIP-seq and ATAC-seq peak annotation. As I intend to perform TOBIAS DNA foot printing analys…