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Hi,
Thanks for this great tool and the great support you guys have provided here!
I had previously posted about running TRUST4 on multiplexed 10X 5' human PBMC scRNA-seq samples (https://github.…
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I applied your script on my data. As you can see in the metadata I have a column called traitment with ( CTRL , TR1 ,TR2 and TR4)
ko_abundance_file
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Modify the loader to work with PMC.
# Example URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id=PMC3898398&retmode=xml
# Use code from here to extract the text: extract_t…
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Hello,
Thank you for the tool. Finally, there is a way to start from SNVs, CNAs and purity and perform QC and check for clonality!
I tried to run `analyze_peaks` command by changing the `min_abs…
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Dear All,
I am just curious what is the difference between EPACTS version 3.4 and 3.2.6 or 3.3.2, As I was unable to find a proper documentation on versions. I compared results of all these version…
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Hello to everyone,
in my new lab I have been given some files from a bisulphite targeted sequencing, with only a few genes. I am new to analysing this kind of results and I am trying to do it with …
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I noticed that kazu changed the input text. I'm curious how it made this mistake and how to prevent it.
To recreate: I passed in a text block that contained the text "The CFIm25 deletion leads …
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# Design
## Additions
For Assay
MUST Use
mCT-seq [EFO:0030060]
"cell" or "nucleus"
MERFISH [EFO:0008992]
"na"
…
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Creating this thread to post potentially useful info about _Pichia pastoris_/_Komagataella phaffii_ that people come across.
Quick background: _Pichia pastoris_ (now named _Komagataella phaffii_) i…
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Paper: https://www.nature.com/articles/s41467-022-30496-0
Please keep this checklist for curation of a new study.
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/…