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caravagnalab
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CNAqc
CNAqc - Copy Number Alteration (CNA) Quality Check package
GNU General Public License v3.0
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Multi-sample CNAqc
#38
caravagn
opened
3 months ago
0
Request to fix 2 bugs
#37
Kazuki526
closed
2 months ago
7
Warning message after changing `min_absolute_karyotype_mutations`
#36
mkyriak
closed
3 months ago
6
Select desidered karyotypses for phasing mutations
#35
nicola-calonaci
closed
5 months ago
4
Enhancements to plot_segments function?
#34
sigven
closed
3 months ago
8
missing specification of package `data.table` in `SBS` function
#33
valerianilucrezia
opened
7 months ago
3
Master becomes the new development
#32
caravagn
closed
7 months ago
0
Multisample utilities
#31
vvvirgy
closed
2 months ago
2
Bug in the analyze_peaks function (not recognizing `matching_epsilon = NULL`)
#30
vvvirgy
closed
5 months ago
3
Wrong centormere coordinates
#29
ivan-balashov
opened
8 months ago
6
Unable to annotate variants
#28
pbousquets
closed
11 months ago
4
highlighting regions of interest
#27
pawanchk
closed
11 months ago
2
Low purity but high VAF
#26
yavorska
closed
6 months ago
10
Merge pull request #24 from caravagnalab/master
#25
Militeee
closed
1 year ago
0
Merge master in maftools
#24
Militeee
closed
1 year ago
0
error running Sequenza_CNAqc
#23
bosmont
closed
1 year ago
6
input somatic mutation file
#22
sabrina0701
closed
1 year ago
3
VROOM_CONNECTION_SIZE setting
#21
wt12318
closed
6 months ago
8
typo?
#20
abcoxyzide
closed
1 year ago
2
Simple edit to `get_karyotypes_colors`
#19
nicola-calonaci
closed
2 years ago
1
Proper cohort-frequency plot (genome wide)
#18
caravagn
closed
2 years ago
1
group_by function error
#17
Taekya
closed
2 years ago
2
update the genome showing
#16
qingjian1991
closed
2 years ago
0
CNAqc v0.1.1: bug in plot_gw_vaf and plot_gw_depth ?
#15
auroramaurizio
closed
2 years ago
0
Subclonal merging into master
#14
Militeee
closed
2 years ago
0
blank_genome: an alternative code
#13
qingjian1991
closed
2 years ago
4
plot_multisample_CNA: code error in missing setting the blank_genome
#12
qingjian1991
closed
2 years ago
4
Additional Karyotypes for Plots
#11
mkinnaman
closed
2 years ago
3
peak_detector_closest_hit_match() fails when all peaks discarded for a karyotype
#10
bobamess
closed
3 years ago
9
Annovar
#9
Militeee
closed
3 years ago
0
Annovar
#8
Militeee
closed
3 years ago
0
Automatically annotate driver and interesting SNVs
#7
Militeee
closed
3 years ago
2
Failed to install 'BMix' from GitHub
#6
firatuyulur
closed
3 years ago
1
Potentially overestimating Clonal (90-100% CCF) Mutations
#5
ahorn720
closed
3 years ago
2
Non-numeric argument to mathematical function dbinom
#4
ahorn720
closed
3 years ago
13
References labels
#3
caravagn
closed
3 years ago
0
Some CCFs are greater than 1?
#2
b-niu
closed
3 years ago
2
Tweakplots
#1
marcjwilliams1
closed
3 years ago
0