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Hello,
I performed an annotation of my genome (N50 = 326 kb) with BRAKER with RNA-Seq. Repeats were softmasked with RepeatModeler + RepeatMasker and the RNA-Seq data was aligned to the softmasked g…
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I am using v.1.5.1 as 1.5.2 just came out and looking at the script I don't see a change in this feature.
I was wondering how you calculated the transposable elements that are recorded during the f…
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Hi all,
My current problem is trying to identify potential gene regulatory networks involving transposable elements (TEs) using 10 samples and rnaseq count data. Currently I have performed a correl…
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Hi Jon,
Thanks for your continuous support of Funannotate! It is very useful!
I ran funannotate 1.5.2 with this command:
/home/chatchai/software/funanno2018/funannotate151/bin/funannotate-pre…
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Presuming the same code were / are used to ID TEs in C virginica and C gigas.
Please generate a simple table where results can be easily compared..
sr320 updated
5 years ago
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I have the following text in the [*C. virginica* methylation draft paper](https://docs.google.com/document/d/1gOMJrnhs4D-jCKWlJK2tm0Z27IrSqMkmc7K1pDBmqi0/edit#) (based on [this notebook entry](https:/…
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@ https://github.com/epigeneticstoocean/paper-gonad-meth/tree/master/code
sr320 updated
5 years ago
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Hi
I was hoping I could get some help with the interpretation of the results in the vcf file. I assume SMRTsv2 vcf follow the specs of the official VCF 4.2 document, however I find that document qu…
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Hi, do you have may be a kind of box chart for funannotate pipeline? Smth like
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Hello I installed all packages, except rmblastn and fasta. I tried lots of times, I still get the version as following.
In fact I have installed rmblastn and fasta in conda.
Could you help me check …