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Using the function eucast_rules(), Stenotrophomonas maltophilia isolates should not be interpreted "R" to ceftazidime.
Indeed, it was updated in v3.1 of EUCAST Expert Rules ( http://www.eucast.org/…
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In individual blastn analysis for genes, I am getting 100% coverage and 98% identity for a gene OXA-51 in strains where abricate analysis summary was showing its absence. Kindly explain this discrepan…
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There are parts in annotating phenotypes that can be automated. Eg. Wherever there's an annotation -> find the term for the "relative to" annotation:
[1] "use a child of OMP:0007134 altered resista…
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Project: ENCODE
Illumina's high throughput sequencing instrument, the NovaSeq 6000 was released in 2017 and is most likely the successor of Illumina's HiSeq models. The NovaSeq leverages cost effe…
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We found the term meaning
"effector-triggered immunity /immune signalling "
GO:0009870 defense response signaling pathway, resistance gene-dependent
Rename
effector-triggered immune signaling …
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PAMP- triggered immunity (PTI) usually first line of defence
Upon association with PAMPs, the pattern-recognition receptors activate a downstream mitogen-activated protein kinase signaling cascade t…
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It's expected for coverage plot to have a peak in the middle with lower coverage on the 5' & 3' ends due to seeding difficulty at the ends. But how would you interpret 'valleys' and heavily skewed pea…
ghost updated
4 years ago
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https://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinder/data/2019-04-29.1/AMR_CDS
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Read 4955, 13 duplicates, wrote 4942.
Non-unique sequence (x2): 1028074076|WP_063838853.1|…
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When two lines have the same "title" AND "year" AND "authors" keep only one (the first? the most complete?)
Below the three key in ISI and SCOPUS:
- title --> ISI = TI / Scopus = Title
- year -->…
tommv updated
3 years ago