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Hello ArchR team!
First of all, thanks for the great package, I've successfully been able to use it for some of my data. However now, I'm trying to analyze data that's not from a species with an incl…
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Hi,
I meet the problem. and i can't find out the reason.
**R version**
```
_
platform x86_64-pc-linux-gnu
arch x86_64 …
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Hi,wenjing.Bother you again.When I use `Cellcano preprocess` to create a gene matrix from the data, an error is reported, the specific content is as follows.I don't know if it's a problem with the fil…
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Error in `Cell_Highlight_Plot()`:
! The list of `cells_highlight` contains duplicate cell names.
ℹ Ensure all cell names are unique before plotting.
Run `rlang::last_trace()` to see where the error…
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Hi,
I'm running into an issue with `Seurat::CellCycleScoring()` in Seurat V5. It worked fine in Seurat V4, but now produces the following error:
```
> sc_obj
An object of class Seurat
23341 f…
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when i used addGeneIntegrationMatrix(),i got error:
Error in .safelapply(seq_along(allSamples), function(y) { :
Error Found Iteration 2 :
[1] "Error in H5Fopen(file) : HDF5. File accessib…
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Hey,
I am using https://stuartlab.org/signac/articles/pbmc_multiomic on a multiome dataset.
I have 5 samples with 5 different fragment files stored in a folder called "Signac_fragpath" ,
Here is…
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Hey all,
I'm trying to use angr for some concolic execution. From looking at some GitHub issues on here + the Driller source, my intuition is that to do this I must (1) get a basic block address tr…
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Hi, I am using this package for GSEA on scRNA extracted from a ArchR project as a SingleCellExperiment object. I was able to use enrichIt however when I run enrichmentPlot it is not finishing even aft…
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Hi, I've been trying to integrate scRNA and scATAC data together using the ArchR package, which uses Seurat functions to perform the integration, specifically FindTransferAnchors(). I've performed…