-
Spotted something when trying to reproduce 6 frame translation in Biopython and using esl-stranslate as comparison. Posting this here rather than on the easel github because it concerns the latest hmm…
-
Please check that all the options for hivnetworkcsv have the correct data type. For example, the -s option (sequence alignment) is notated as an hmmer3 file. It should instead be set up to accept FAST…
spond updated
6 years ago
-
Hi!
I'm struggling here with something a little stupid I think...but I don't understand why it doesn't work.. I don't know if it's scif or singularity related, or both; or most probably I'm doing som…
-
Hello,
pfscan is one part of pftools. There is something incorrect about this description of this tool set. The issue is that fortran has nothing to do with make/install not working; that is from…
-
I was trying to run the pipeline and not worked properly. It worked for the prediction of sus genes, but not for GH results (dbcan)
Trying to understand the pipeline, I found that hmmscan-parser.sh c…
-
I used to be able to run prokka with no problem but recently this error message keeps popping up:
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Can't build a GFF object with the u…
-
Hello,
I'd rather my changes to Hmmer2 be upstreamed. Added a default suffix of 2, but this is over-ridable. Also did some other various cleanups. In order to review and cleanly merge these, a b…
-
A new, even more rare case where sequences containing `*` (stop codons) can cause crashes.
## Reproducing the bug
Ryan Groussman (UW) reports that the Pfam Ank_2 (PF12796.6) profile versus a par…
-
In order to test if the latest conda version is actually working for us right now, I started to test all IUC tools against latest miniconda3.
```
% /home/bag/miniconda3/bin/conda --version …
-
I've been able to get all of the dependencies and databases setup so far except for the repeats database.
When I run `funannotate setup -d /Users/b8a/Bioinfotools/Databases -i repeats --update`
…