vsoch scif issues - Githubissues

vsoch / scif

scientific filesystem: a filesystem organization for scientific software and metadata

https://sci-f.github.io/

Mozilla Public License 2.0

30 stars 12 forks source link

issues

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Reworked app.run exit code

#73 dmachi closed 5 months ago
2
add workflow to release to pypi

#72 vsoch closed 5 months ago
0
Revert "exit with the exit code from a app when run()"

#71 vsoch closed 5 months ago
0
SCIF v0.8.2 does not substitute [e]ENV_VAR correctly

#70 dtrudg opened 5 months ago
8
updating linting

#69 vsoch closed 5 months ago
0
exit with the exit code from a app when run()

#68 dmachi closed 5 months ago
5
Exit Code from scif run

#67 dmachi opened 5 months ago
12
install script should exit on nonzero return code

#66 vsoch closed 4 years ago
1
scif install should return error exit code on error during appinstall

#65 bilke opened 4 years ago
6
Only support Python 3.6 and up

#64 vsoch closed 4 years ago
1
inadvertent Python 3.6 dependency?

#63 samcmill closed 4 years ago
13
Adding fixes samcmill, black formatting

#62 vsoch closed 4 years ago
0
fix shell behavior

#61 samcmill closed 4 years ago
1
Testing stream and capture of output

#60 vsoch closed 4 years ago
10
Investigate stream and captured output

#59 dkp closed 4 years ago
8
Test adding quay.io

#58 vsoch closed 4 years ago
0
testing deploy from circle

#57 vsoch closed 5 years ago
0
circleci should release latest and tagged version

#56 vsoch closed 5 years ago
0
Fix/client bugs

#55 vsoch closed 5 years ago
3
runscript shouldn't be written if no apprun section

#54 vsoch closed 5 years ago
0
`scif run myapp -h` triggers the scif help

#53 bilke closed 5 years ago
6
Fix to make test and runscript scripts executable on install

#52 vsoch closed 5 years ago
0
singularity run --app support?

#51 bilke closed 5 years ago
6
scif run working directory

#50 bilke closed 5 years ago
2
CWL CommandLineTool

#49 tetron opened 5 years ago
4
Weird behavior in Singularity recipe

#48 saramonzon closed 5 years ago
7
Nextflow-SCIF example : Possible solution

#47 saramonzon closed 5 years ago
7
test function needs to check that app is valid first

#46 vsoch opened 6 years ago
0
TESTS needed across all functions

#45 vsoch opened 6 years ago
0
adding functions to expose test command

#44 vsoch closed 6 years ago
0
[entrypoint] for test not provided

#43 vsoch opened 6 years ago
0
create conda recipe

#42 vsoch opened 6 years ago
0
Fix/environment

#41 vsoch closed 6 years ago
0
$SCIF_* environment variables not available in %appinstall

#40 bilke closed 6 years ago
6
Fix/shell

#39 vsoch closed 6 years ago
0
remove (now old) docs from here

#38 vsoch closed 6 years ago
1
Appnames period parsing

#37 vsoch closed 6 years ago
0
update dates in licenses

#36 vsoch closed 6 years ago
0
Support app names containing period (".")

#35 Saford91 closed 6 years ago
5
Testing

#34 vsoch closed 6 years ago
0
introduced bug when installing files

#33 vsoch closed 6 years ago
0
Add environment to be sourced (inline with runscript)

#32 vsoch closed 6 years ago
0
test echo of variable to $SCIF_APPENV during install

#31 vsoch closed 6 years ago
1
Fix/parsing

#30 vsoch closed 6 years ago
0
scif exec parameter parsing fails?

#29 fbartusch closed 6 years ago
18
print of help needs to honor spacing

#28 vsoch closed 6 years ago
1
python2 exec invalid name

#27 vsoch closed 6 years ago
0
Fix parsing of additional arguments to run

#26 vsoch closed 6 years ago
0
Create entrypoint to activate environment

#25 vsoch closed 6 years ago
1
run needs to parse / pass on additional arguments

#24 vsoch closed 6 years ago
0