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Try oncogene neg vs pos for LUAD as a contrast. Take it through the UI Heuristic Evaluation process
1 - come up with use-case / tasks / needs for what the researcher will do and drill into needs /…
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Hi, @ndaniel
what is the meaning of SPOTLIGNT? I did not find details about it in the doc. Please see the link here https://github.com/ndaniel/fusioncatcher/issues/115.
Thank you very much.
…
xiucz updated
4 years ago
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Hi, @ndaniel
When I check the sequence and coordinate, I find the inconsistency:
```
$ grep TPR final-list_candidate-fusion-genes.txt
TPR JAK2 known,similar_reads,oncogene,ambiguous,cance…
xiucz updated
4 years ago
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Dear @dami82,
I'm writing a manuscript involving your software package, and I plan to finish it by next month.
Can you tell me how to cite mutSignatures? Is it okay for me to cite your GitHub re…
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Hi,
First of all, good job with arriba :]
I was trying to export some additional information from the GTF file by making use of the `-G ""` parameter, but I (always) get:
`ERROR: Malformed GTF f…
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Hi, @ndaniel
I find the conversion from hg38 to hg19 is a little different from the result from [https://genome.ucsc.edu/cgi-bin/hgLiftOver](https://genome.ucsc.edu/cgi-bin/hgLiftOver).
Please se…
xiucz updated
4 years ago
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I have run a few files from the same experiment with no issue but with one set I keep getting this error after a few minutes:
```
Time loading forward index: 00:00:03
Floating point exception (core…
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Hi,
I followed the instruction and installed fusioncatcher by this command:
wget http://sf.net/projects/fusioncatcher/files/bootstrap.py -O bootstrap.py && python bootstrap.py -t --download
Aft…
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```
[2019-12-24 20:21:02,287: INFO/MainProcess] Received task: find_paper_async[318ca4cc-6b6a-460f-9976-5c0431e38abc]
[2019-12-24 20:21:02,311: INFO/ForkPoolWorker-6] Searching for a publication wit…
olegs updated
4 years ago
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I would like to split the rows in two groups. The splitting actually works, the only problem is that is it does not work as expected.
```
dats