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Hello,
Is that possible to draw a 95% confidence ellipse around the dots representing a set of samples in Emperor?
I saw some related issues, but it seems also that it stopped being updated a long …
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Hello developers!
Im having a strange issue with rrarefy that I cant seem to figure out. At first, I thought it was a problem. I have a count table that is 77x10493 (samples are row names and vContig…
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Hello,
I am using conda to install AMR++ pipeline but the demo crashed while parsing nextflow.config with the following error:
(AMR++) shreya@DESKTOP-D417TM9:~/AMRplusplus$ nextflow run main_A…
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### Background
Currently, the qp-qiime2 plugin (for analyses) only adds available commands that have 1 input artifact via the GUI - to be clear these are inputs not parameters; for example the step…
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Hi I got the error during test the pipeline with your testing data
nextflow run main.nf --input test_data/testing.tsv --metadata test_data/test_metadata.tsv -profile conda --outdir test_pipeline_re…
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Hi Uri,
Congrats on a very interesting project. I would like to regenerate the rarefaction plots from Figure 1 of the current Biorxiv paper. Are you able to provide the input table and code for mak…
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Hi,
this is more of a general methodological question.
If we use PICRUSt2, when in the pipeline should be samples rarefied? Is it on the OTU-table, before plugging it in? Or after predictions ar…
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Hello
Could you please advise if you think it is a good practice to subset samples that have a higher number of reads in comparison to other samples? after running dada2 for downstream analysis. A…
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Hey @T-Engel I'm testing out the recent merge of the beta_C code and I notice I was getting the following warning:
```
beta_C(inv_comm[1:2, ], 0.9787)
142
1.46706
attr(,"C")
[1] 0.9787
…
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Hii There ...
I am continuously facing an issue in the ampliseq pipeline at 'NFCORE_AMPLISEQ:AMPLISEQ:DADA2_QUALITY (FW) stage. The error has been pasted below.
"
Error executing process > 'NFC…