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Run assembly on datasets with trio (HG002, HG005, non-human) and evaluate switching error within unitigs before bubble popping.
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Hello,
The building time for me seems to be much higher than the results in Table 5 of the paper. What value of k corresponds to the results in Table 5? I downloaded both the k=31 and k=63 human fi…
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`metaMDBG` is a phenomenal tool for assembling metagenomic data. During my testing, I found that I could construct small plasmids where other popular long-read assemblers could not.
One of the bigg…
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Me again.
This time in count_haplotype_markers
```
Running contiBAIT QC
-> Checking for high quality libraries
-> 000007 has insufficient reads. Removing
-> 000019 has insufficient …
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Hi @lemene,
I hope you are well.
I have just tried PECAT with our ONT data from a plant genome, it worked like a charm, and I got the best primary assembly ever! Thank you very much for your bri…
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Hello, thank you for this excellent tool.
I'd like to investigate genetic differences among the populations defined by population structure analysis.
(pop1 n=67, pop2 n=250)
But I got an error wh…
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Dear author,
I encountered an assertion error in running MBG. The error message is as follows:
......
try resolve k=14999, replaced 0 nodes with 0 nodes
102149 unitigs after resolving
Building …
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Hello,
First of all, thank all developers for this useful and powerful tool!
I have tried verkko with Hi-C data to gain a phased assembly as below and faced an error at rule copyFiles step.
stdout …
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Hello,
When I run "make" to install themisto on my mac laptop, I get the following error:
error[E0635]: unknown feature `stdsimd`
--> /Users/rohan/.cargo/registry/src/index.crates.io-6f17d22b…
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Hello,
I ran lphash on the S. cerevisiae [reference genome](https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/146/045/GCA_000146045.2_R64/) and received the following error:
```
[Error] differen…