bioforensics yeat issues

bioforensics / yeat

YEAT: Your Everyday Assembly Tool

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Downsample options not showing when using just `yeat`

#80 danejo3 closed 3 days ago
1
SLURM grid support

#79 danejo3 closed 21 hours ago
1
0.6 RC

#78 danejo3 closed 2 months ago
0
Customize downsample, depth of coverage, and genome size per sample

#77 danejo3 closed 2 months ago
0
`yeat-auto` - automatically fill in samples for the config file

#76 danejo3 closed 2 months ago
1
Providing genome size for each sample and clarify downsample flag

#75 danejo3 closed 2 months ago
0
just-yeat-it: new YEAT CLI command

#74 danejo3 closed 3 months ago
1
Updating the test suite to reflect how Assembly objects are created

#73 danejo3 closed 3 months ago
0
Setting a limit or cap for the test suite number of avaliable cores

#72 danejo3 opened 3 months ago
0
Passing in references for Metaquast

#71 danejo3 opened 5 months ago
0
Auto fill the config file

#70 danejo3 closed 5 days ago
1
Running YEAT without a config file

#69 danejo3 closed 5 days ago
1
Hybrid

#68 danejo3 closed 3 months ago
0
0.5-RC

#67 danejo3 closed 5 months ago
0
Canu's Grid support

#66 danejo3 opened 6 months ago
0
Adding grid support

#65 danejo3 closed 5 months ago
1
Updating config file

#64 danejo3 closed 6 months ago
1
Add `-m` to seqtk command when low on RAM

#63 danejo3 opened 8 months ago
1
Disable fastp if the user doesn't need to filter reads

#62 danejo3 opened 9 months ago
0
Adding grid support for YEAT

#61 danejo3 opened 9 months ago
1
Using Bandage on WSL2 users

#60 danejo3 opened 9 months ago
0
Adding metaMDBG into YEAT

#59 danejo3 closed 9 months ago
1
Replace pkg_resources with importlib.resources

#58 standage closed 10 months ago
1
Adding `metaMDBG` into YEAT

#57 danejo3 closed 9 months ago
2
Updating the config file for hybrid assembly support

#56 danejo3 closed 5 days ago
4
Adding Unicycler to long read assembly workflows

#55 danejo3 closed 10 months ago
0
Update environment.yml

#54 danejo3 closed 10 months ago
0
0.4-RC

#53 danejo3 closed 10 months ago
0
Integrating Hybrid assembly support

#52 danejo3 opened 10 months ago
1
Handling `fasta` user input files

#51 danejo3 opened 10 months ago
0
Single-end Support

#50 danejo3 closed 10 months ago
1
Adding Hifiasm and Hifiasm-meta for Pacbio Hifi-reads

#49 danejo3 closed 10 months ago
2
Update fastp parameters

#48 kygarcia closed 10 months ago
0
Oxford nanopore

#47 danejo3 closed 11 months ago
0
Update README.md

#46 danejo3 closed 1 year ago
0
Update setup.py

#45 danejo3 closed 1 year ago
0
YEAT v0.3 release candidate

#44 danejo3 closed 1 year ago
0
New config file format; enables multiple input samples and running multiple assembly algorithms (both paired and pacbio!)

#43 danejo3 closed 1 year ago
5
Calculating PacBio Hifi data sample's genome size with MASH

#42 danejo3 opened 1 year ago
0
Enabling support for handling multiple samples

#41 danejo3 closed 10 months ago
0
Enabling support for running the same assemblers multiple times

#40 danejo3 closed 1 year ago
0
Adding Metagenomics assemblers and YEAT assembler Metagenomics assembler options

#39 danejo3 closed 10 months ago
1
Adding metaquast as an option if reference data is avaliable

#38 danejo3 opened 1 year ago
0
Adding support to do basic pacbio hifi-read assembly with Flye and Canu

#37 danejo3 closed 1 year ago
3
Handling single-end short reads

#36 danejo3 closed 10 months ago
1
Adding support for long read assembly algorithms

#35 danejo3 closed 5 days ago
3
Adding Bandage to YEAT's workflow

#34 danejo3 closed 1 year ago
2
0.2 RC

#33 danejo3 closed 1 year ago
0
Eliminate the need for multiple copies of each file

#32 standage closed 1 year ago
1
Accepting uncompressed fastq files

#31 danejo3 closed 1 year ago
3