issues
search
bioforensics
/
yeat
YEAT: Your Everyday Assembly Tool
Other
1
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Adding `--genome-size` flag to override auto-calculated genome size
#30
danejo3
closed
1 year ago
3
Adding `--seed` flag to customize the `seed` when downsampling
#29
danejo3
closed
1 year ago
2
Add a flag to override genome size estimation
#28
danejo3
closed
1 year ago
1
test_custom_downsample_input() test failing
#27
danejo3
closed
1 year ago
3
Input is assumed to be gzipped - FastQC crashes if it is not
#26
lovettse
closed
1 year ago
0
Suggestions for downsampling
#25
standage
closed
1 year ago
1
Adding Bandage to visual genome assembly
#24
danejo3
closed
1 year ago
11
Improved auto downsampling with custom coverage and avg read length
#23
danejo3
closed
1 year ago
2
Tailoring the auto downsampling variables even further
#22
danejo3
closed
1 year ago
1
Adding custom downsample flag
#21
danejo3
closed
1 year ago
4
Run long tests when needed
#20
danejo3
closed
1 year ago
1
Suggestions for assembler config code [skip ci]
#19
standage
closed
1 year ago
1
Adding additional flags/arguments when assembly algorithms are called
#18
danejo3
closed
10 months ago
0
Add optional custom downsample number
#17
danejo3
closed
1 year ago
0
Adding multi-assembly config support
#16
danejo3
closed
1 year ago
14
Assembler parameter pass-through
#15
standage
opened
1 year ago
0
Adding Unicycler to the workflow
#14
danejo3
closed
1 year ago
3
Implementing MEGAHIT Into YEAT
#13
danejo3
closed
2 years ago
3
Implementing a config file for handling various assembly algorithms
#12
danejo3
closed
1 year ago
5
Circularizing plasmid assemblies
#11
danejo3
closed
1 year ago
3
Adding support for MEGAHIT
#10
danejo3
closed
2 years ago
0
Reorganize outputs
#9
lovettse
opened
2 years ago
1
Test workflow in test suite
#8
standage
closed
1 year ago
0
Adding a stop/resume/redo functionality to the workflow
#7
danejo3
opened
2 years ago
1
Create YEAT user manual
#6
danejo3
opened
2 years ago
1
Adding FASTQC Support
#5
danejo3
closed
2 years ago
5
Implement FASTQC feature
#4
danejo3
closed
2 years ago
0
Packaging and Version Control
#3
danejo3
closed
2 years ago
2
Finding/Executing The Best Flags For Each Rule in Snakefile
#2
danejo3
opened
2 years ago
0
Create A Python Package for YEAT
#1
danejo3
closed
2 years ago
1
Previous