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We found the term meaning
"effector-triggered immunity /immune signalling "
GO:0009870 defense response signaling pathway, resistance gene-dependent
Rename
effector-triggered immune signaling …
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PAMP- triggered immunity (PTI) usually first line of defence
Upon association with PAMPs, the pattern-recognition receptors activate a downstream mitogen-activated protein kinase signaling cascade t…
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It's expected for coverage plot to have a peak in the middle with lower coverage on the 5' & 3' ends due to seeding difficulty at the ends. But how would you interpret 'valleys' and heavily skewed pea…
ghost updated
5 years ago
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https://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinder/data/2019-04-29.1/AMR_CDS
```
Read 4955, 13 duplicates, wrote 4942.
Non-unique sequence (x2): 1028074076|WP_063838853.1|…
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When two lines have the same "title" AND "year" AND "authors" keep only one (the first? the most complete?)
Below the three key in ISI and SCOPUS:
- title --> ISI = TI / Scopus = Title
- year -->…
tommv updated
4 years ago
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In `AMR_CDS` and some other files it is just `NG_047055`
```
>446950888|WP_001028144.1|NG_047055|1|2|aac(6')-Ie|aac(6')-Ie|
bifunctional_aminoglycoside_N-acetyltransferase_AAC(6')-Ie/aminoglycosi…
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GO:0009626 plant-type hypersensitive response
The rapid, localized death of plant cells in response to invasion by a pathogen.
GO Comments
Note that term is to be used to annotate gene pro…
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The FASTA headers in `AMRProt` are documented here:
https://github.com/ncbi/amr/wiki/AMRFinderPlus-database#amrprot
Example entry:
```
>1000909371|WP_061158039.1
|1|1|blaTEM-156|blaTEM
|hydrol…
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On the genome landing page "Computational Prediction" (bottom left of the image) should never mask panel data.
Here is an example of a CDC ARBank genome that has gold standard panel data, but on th…