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On _Donor_ page at the bottom we list all samples and sequence data associated with them. As CGHub has long been stopped, we need to point to the new data repo replacing CGHub, ie, GDC.
To link to …
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Once a new release is made, the client of the data coordinator will came to the data service to collect the data.
Would be possible to have an API that returns the difference on the study by the fi…
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Dear developers,
I am getting a 404 when using legacy=TRUE to get a set of files().
For example:
`file_list = files(legacy = FALSE) %>% results()`
works fine, but
`file_list = files(leg…
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-graphical visualization of the subcellular localization based on the cellular component go annotation
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Hi Colins,
looks really good!. Some feedback
1. I think we need to describe the problem domain as in what problem this tool is helping solve and how is it doing it (uses manifest to download the f…
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**Background**:
[The NCI's Genomic Data Commons (GDC)](https://gdc.cancer.gov/) provides the cancer research community with a unified data repository across cancer genomic studies. GDC has provide…
jjgao updated
6 years ago
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'Initial Weight' has been incorrectly labeled as 'Initial Patient weight' in cBioPortal.
Example: http://www.cbioportal.org/case.do#/patient?caseId=TCGA-2A-A8VL&studyId=prad_tcga&tab=clinicalDataTab…
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Given feedback from multiple developers citing concerns about our initial plans for a limited input system, the WebXR community group wanted to re-open a discussion about how to handle more advanced i…
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Hi,
I want to transform hg38 maf to vcf,
```
$ ../biotools/vcf2maf/maf2vcf.pl --input-maf ../data/TCGA.LUAD.mutect.hg38.somatic.maf --output-dir ./test_vcfs
ERROR: Provided Reference FASTA is …
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At the meetup last night (9/6) we discussed already existing services that provide a way of visualizing the input data to cognoma. @mike19106 had the idea that we may be able to query into the API of …