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Hi Isaac,
I'm running ipyrad [v.0.9.90] with maximum memory allocation (184G), 48 threads, and with the following (relevant) params:
```
~/all_trimmed_reads/*.fq ## [4] [s…
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When I run 5p10XTCR with the example data TCR3.fastq.gz on my MacOS system, I got the error:
"Traceback (most recent call last):
File "/Users/Home/nanoranger/pipeline.py", line 236, in
util…
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Hello,
Is it possible to subset a pegasus h5ad file using a list of barcodes?
Thanks,
Yoav.
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Is there anything in the structure of amptk that would prohibit using Nanopore amplicon data as input?
Fragment lengths are ~1500 bp. Input fastq are already adapter and quality trimmed and demulti…
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Hi, when running SubPhaser i get the following error:
```
Traceback (most recent call last):
File "/home/531734/.conda/envs/SubPhaser/bin/subphaser", line 33, in
sys.exit(load_entry_point…
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Hi,
Running LACHESIS in the below way did not provide the expected chromosome numbers because I got 115 groups.
```
/usr/local/bin/Lachesis lachesis.ini
/LACHESIS/src/bin/CreateScaffoldedFasta.…
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Hello,
I am using PRICE software, it is really a wonderful tool, I have used it to predict ORF of several samples and it works well. Unfortunately, now I encounters a problem when analyzed a sample. …
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# Binning with CONCOCT
What makes CONCOCT an unsupervised binner is that it bins based on the characteristics of the sequences (sequence composition) and coverage information. Tetranucleotide freque…
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Hello,
I've been trying to run amplicon architect for several days now but the run reaches a certain point and does not progress further without giving any errors or terminating. I am running it …
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Hi @jlevy44 , I ran polycracker test_pipeline with my genome (with same name algae.fa) in test_data/test_fasta_files folder. It executed all the sub-program but after that show following error:
```…