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Hi, I noticed that in function StatKOAttributes, using the adjusted p-value from Wilcoxon rank-sum test or t-test to calculated Z-score of every KO. I wonder what if I used p-value generated from othe…
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Hello everyone!
It is fully possible that I am doing something wrong, but it would be great it someone can check the following;
when I run the rarefy_even_depth on metagenomic sequencing data, …
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Hi Thom,
I remember listening to your bioformatics chat podcast (https://bioinformatics.chat/propr) a while back and recently dove into the literature on several compositional data analysis reviews/…
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Hi!
We're running hybrid pacbio/illumina metagenomic assemblies through OPERA-MS, and repeatedly having the process fail at the pilon polishing step, even at supplied memory up to ~200G.
In the…
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Lately we are being asked how does the OBIS-ENV format deal with omics. I have found the DwC term "associatedSequences" that we could use to link the sequence to the occurrences.
It seems suitable…
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I am considering looking for overlapping genes in some viral metagenomes I obtained. I am not interested into the overlaps themselves but more into genes that I would have missed because of big overla…
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Hi,
Thanks for developing this great software!
I have encountered an error in the polishing step when running Abruijn on a mixed/metagenomic 1D Nanopore-dataset (many organisms with varying cove…
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**Deliverable this task is associated with**
_See Deliverables tab here: https://docs.google.com/spreadsheets/d/1z_b6WbuTk4pI0Q-Z-rfCgC-8R3m3F2_JDevYuK8CjYE/edit?usp=sharing_
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**RACI**
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Dear Dr. Sean,
I hope this message finds you well. I am writing to express my admiration for your recent publication in Current Biology titled "High viral abundance and low diversity are associated…