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https://www.nature.com/articles/s41591-021-01448-w
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this c…
jjgao updated
3 years ago
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Hi. I cannot install the package 'discover'.
options(repos=c(getOption("repos"), "http://ccb.nki.nl/software/discover/repos/r"))
install.packages("discover")
The codes lead to errors.
Warnin…
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**Describe the bug**
Used xdr2img to convert a .scan file to .nrrd file. Error message (decompression library not compiled) after changing in function xdr_reader.py r.21 to nki_compression = ctypes.…
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**Describe the bug**
The bug relates to [NKI-AI/openslide](https://github.com/NKI-AI/openslide), (and [openslide/openslide](https://github.com/openslide/openslide)). It is independent of dlup.
Whe…
frank updated
3 years ago
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I was just wondering what the type of data should go in Dataset Examples: should Raw (Non-BIDS) data be in there? The term raw is a bit confusing since BIDS is meant for raw data.
@Park-Patrick @Ki…
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Datalad version: 0.14.0
System distribution: debian/10.8
Python version: 3.7.3
I tried to crawl the enhanced NKI-Rockland sample with the instructions in [this post on Neurostars] (https://neuros…
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Neither CNA or expression template headers are inconsistent throughout the database. These will needed to be harmonized to one standard header for use in postgres.
Furthermore, many of the columns in…
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As a developer I want to retire WP and create a sustainable way to store and retrieve static content
Static content and platform pages need to be processed into the appropriate files in the git data …
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I feel that we have multiple "activities" going on in the datalad which could benefit from having the nice run record to be able to tell later on how we came about those commits.
### Procedures
In…
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mkdssp version 46 2021-01-13
running on the original 101M entry produces a very short dssp file. Most residues are missing:
```
==== Secondary Structure Definition by the program DSSP, NKI vers…