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---
id: vcell
version: 7.4.0.31
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.4.0.31/biosimulators.json
specificationsPatch:
version: 7.4.0.31
image:
url: ghcr.io…
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---
id: opencor
version: "2021-10-05"
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_OpenCOR/e00645e372baf7475957af9487856ad9ddd18814/biosimulators.json
specification…
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- [ ] Read SBML models provided in COMBINE archives and write the reports for all SBML files in the COMBINE archive.
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### Contact Details
_No response_
### Location
BioSimulations API
### What happened?
When running a simulation with an invalid omex archive, the job fails as expected. However, the dispatch servi…
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@bilalshaikh42 I think we can use a schema like the following to allow metadata to be encoded into `.rdf` files in OMEX archives. Expecting such files and then parsing their contents avoids much of t…
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---
id: vcell
version: 7.4.0.30
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.4.0.30/biosimulators.json
specificationsPatch:
version: 7.4.0.30
image:
url: ghcr.io…
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There is a simulationRunFile in the database that contains information about the omex archive. Now that we have a list of all the associated files of the simulations, this should be added there instea…
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https://github.com/virtualcell/vcell/blob/265ed3c6d41d952fec282fbb356ab76728dabe00/vcell-cli/src/main/java/org/vcell/cli/CLIStandalone.java#L336-L340
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###### This issue was generated by [todo](ht…
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Running the sumbit script casues the following error for the RVA simulation. Disabled this particular one allows remaining simulations to proceed.
```
Traceback (most recent call last):
File "/…