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Dear Arkadiy,
I am getting the error below - could you help me understand what is going on and how to fix this?
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Consolidating summary files into one master summary file
Identifying genomic…
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Hello,
I am aligning 5210 RNA-seq reads to all the predicted ORFs from Arabidopsis thaliana. STAR finishes successfully without any issues. This is how my command looks like:
STAR --runThreadN 50 …
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Hey!
I am trying to run VirClust standalone, but I am getting the following error message:
VirClust called with projdir=/virclust/virclust_scripts/out infile=/virclust/virclust_scripts/in/test.f…
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For the chimeric UTR data analysis, all our constructs have the same 3'UTRs, and there are few motifs present, so we should fit a model to only that data.
At the moment the analysis in
`raw_data_a…
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From #7 we see that ZBTB16 & SLC39A1 are strongly anti-correlated in ORF data and CRISPR data, and it's novel (not seen in Evotec KG).
Zinc finger and BTB domain-containing protein 16
SLC: Zinc t…
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Hi,
RiboCode runs on my dataset from _Cryptococcus neoformas_, then fails during the writing to gtf. This meant that ORF calling succeeded and wrote a complete .txt file, but for the .gtf output lef…
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Hello,
When I try to run the program (at the runPipeline component), I get this error message at the "findorfs" step and I'm not sure what it means or what I should do to fix the issue:
********…
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Hi Brian,
After running, I can't find the output file in the current folder, could you tell me why?
Here's what I've been running :
docker run --rm -v`pwd`:`pwd` trinityrnaseq/transdecoder …
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hi developer,
can I use ORFs(produced by prodigal-gv) as input to get my faa files?
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### Description
This problem appears to originate inside STA, but I have very little to go on to track down the error. I think it is a problem in my design, but I'm not able to find out where to set …