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```
(anvio-master) -bash-4.2$ anvi-self-test -v
Anvi'o version ...............................: margaret (v5.3-master)
Profile DB version ...........................: 31
Contigs DB version .......…
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THIS *IS* A TECHNICAL ISSUE
---------------------------------------------
Hello,
I'm having trouble installing anvio-6.1 on a debian 7 remote server.
I followed the instructions here: https:…
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Operating system macOS Sierra.
Painless installation with Conda completed successfully.
`anvi-self-test --version`
Anvi'o version ...............................: margaret (vunknown)
Profile DB …
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How can I add interpro results to external genomes for the pangenomics workflow?
I tried this:
```bash
$ ./interproscan.sh \
-i Sulfurimonas_autotrophica.faa \
-f tsv \
-o Sulfurimona…
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Hi,
I have a question about the structure of the file when you run the anvi-summarize command resulting in a file with the annotation of the gene clusters of all genomes. In the gene function colu…
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I will start with a simple case: compact de Bruijng graph (cDBG). We can construct a cDBG for GRCh38 and keep chromosome paths (more exactly walks). This is a lossless representation of GRCh38, but wi…
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I have a question about the pangenomics workflow:
If I look at the image from the phylogenome workflow (see below), I see the regions that show high similarity.
![image](https://user-images.git…
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Thanks to @mahmoudyousef98's excellent addition to the codebase (see #977), the anvi'o pangenomic workflow has two new indices to investigate within gene cluster homogeneity.
There are at least t…
meren updated
5 years ago
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Someone send me this paper today https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/bty833/5106166 , explaining that max-target-seq = 1 option do not select be…
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It would be useful if there were a direct way to extract all nucleotide sequences from a specific protein cluster resulting from a pangenomics analysis.